Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015857975.1_cds_XP_016513648.1_26169
CDS Infomation

[gene=LOC107830557] [db_xref=GeneID:107830557] [protein=E3 SUMO-protein ligase SIZ1-like isoform X4] [protein_id=XP_016513648.1] [location=join(109819..109874,113192..113279,113355..113430,113817..113890,114113..114220,114693..114854,115335..115439,115549..115629,115789..116995,117379..117545)] [gbkey=CDS]
Sequence

ATGGCAAACCCTTTATATCCTGCTAAGTTGGCTATTACTAGCGTTCCTGTAGATGGCACG
AGCCCTATACAAAGGATTGAGAAAACATTTCAGCTTACTAGAGCAGACAGAGACTTATTG
CTAAAGCAGGAATACGATGTTCAGGTTTGGTGCATGCTTCTCAATGACAAGGTACAATTT
AGGATGCAATGGCCTCAGTATGCTGATTTGCAGGTCAATGGAATTCCAGTACGGTGCATA
AATAGACCTGGTTCACAATTGCTGGGTGCAAATGGCCGAGATGATGGTCCAATAATCACA
CCATGCTCTAGAGATGGAATTAACAAAATTATATTAACAGGATGTGATGCTCGTGTCTTT
TGCTTGGGGGTTAGACTTGTAAATCGCCGTACTTTCCAACAGGTTCTCAATGTGATCCCT
AAGGAGGCAGATGGTGAGGTATTTGATGATGCTCTTGCTCGCGTTCGTCGTTGTGTTGGT
GGTGGGACTGCCACTGAAAATGCTGACAGCGACAGTGACCTTGAAGTGGTTGCTGATTTT
ATTCCAGTCAATCTTCGATGCCCTATGAGTGGTTCAAGAATGAAAGTCGCTGGAAGATTC
AAACCTTGTGTGCATATGGGCTGCTTTGATCTTGAAGTCTTTGTTGAAATGAATCAAAGG
TCGAGGAAGTGGCAATGCCCTATCTGTCTCAAGAACTACTCCCTGGAGCATGTGATTATA
GACCCATATTTTAATCAGATCACTTCTCAGCTGCGAACTTGCGGAGAAGAAGTGACTGAG
ATTGAAGTAAAACCTGATGGTTCTTGGCGTGCAAAGGCAGAAGGCGACCGAAGGAATCTT
GGGGATCTAGGGCGGTGGCACTTACCTGATGGGAATCTCATTGAATCTCAGGATATAGAG
CCAAAAGCCAAGCCTGGAATTCTTAAGCATGTTAAACAGGAAGGAGGCTCTGAAAGCCAC
AGTGGACTAAAAGTTGGGTTGAAGAAGAACAGAAATGGTTTGTGGGAAATTAGCAAACCT
GAAGATATGCAGACATTGCCATACGAAAATAGTGTAAGAGAGAATTTTGAAAATCAGATT
CAGGATATCATTGCCATGAGCAGCAGTGCCACTGGTAGCGGCAAGGAAGGTGAAGATCTC
AGTGTTAATCAGGATGGGGATGTTAACTTTGACAATTCTAACAATGGGTTTGAGCTTGAA
ACCATATCCCCAAATTTTGGCCCGAGATATGGTTTTAACGGCCGTAATCCCCCAGCACCC
TCAGGAGATGCTGAAGTTATTGTCCTAAGCGATTCTGACGGAGAAAACGAGCCACTTATC
TCTTCTACATCTATTCATAGTAACAATCATGCTGATGCGTCTATAGTCTCTTTTCCTGGT
CGACCTAAAGGAATTTCAGATTCTTGCCATGACAACCATGCAGTTGTTAATGATGGGAAT
TCATGCCTGGGGCTGTTCAATGCAAACGATGATGAATTTGGGATGGATATGTGGCCTTTG
CCTTCTGTTAACCAGGGGGGCCCGAGCTTTCAGTTATTTGGTTCAGATACTGATGTCTCA
GGTTCTTTAGTAGATATGCAGCATGGTTCTATTAACTGTCCAAGCTCTATCAACGGCTAC
TCATTAGCTGCAGATACTGGCGTTGGATCTTGTTCTCTTCTTCCTGAATCTTCTGTTGAC
CGTCTGAATGCTGAAATCAATGATGGTTTAGTTAATAATTCCCTATCATTTGGTGGTAAT
GATCCCTCACTTCAGATATTTCTTCCTACTAGACCATCGGATGCATCAGTTGAGGCTGAT
ACGAGGCATCGGCCAGGTGTGAGAAATGGCATTCATACTGAGGATTGGATTTCACTTAGT
CTTGGCGCTGGTGGTGATTCTGCAGTTGCGAATGAGTTGAGCTCTGGGCAGCCGTCGCAA
ACCAAAAACTCTTCCTTGGACTCGGTGGCTGACACTGCTTCATTGCTTCTTGGTATGAAT
GACGGAGTATCAATGAAGAGCAGTAAAGAAAGATCAAATGGTCCAAGCAGCAGAGAAAGA
TCAGATGGTCCTTTTAATTTCCCTCGCCAACGTCGTTCTGTAAGACCCAGATTGTATCTA
AGCATTGATTCCGACACTGAATAA

Peptide Sequence

PEP ID

XP_016513648.1
PEP Infomation

PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform X4 [Nicotiana tabacum]
Sequence

MANPLYPAKLAITSVPVDGTSPIQRIEKTFQLTRADRDLLLKQEYDVQVWCMLLNDKVQF
RMQWPQYADLQVNGIPVRCINRPGSQLLGANGRDDGPIITPCSRDGINKIILTGCDARVF
CLGVRLVNRRTFQQVLNVIPKEADGEVFDDALARVRRCVGGGTATENADSDSDLEVVADF
IPVNLRCPMSGSRMKVAGRFKPCVHMGCFDLEVFVEMNQRSRKWQCPICLKNYSLEHVII
DPYFNQITSQLRTCGEEVTEIEVKPDGSWRAKAEGDRRNLGDLGRWHLPDGNLIESQDIE
PKAKPGILKHVKQEGGSESHSGLKVGLKKNRNGLWEISKPEDMQTLPYENSVRENFENQI
QDIIAMSSSATGSGKEGEDLSVNQDGDVNFDNSNNGFELETISPNFGPRYGFNGRNPPAP
SGDAEVIVLSDSDGENEPLISSTSIHSNNHADASIVSFPGRPKGISDSCHDNHAVVNDGN
SCLGLFNANDDEFGMDMWPLPSVNQGGPSFQLFGSDTDVSGSLVDMQHGSINCPSSINGY
SLAADTGVGSCSLLPESSVDRLNAEINDGLVNNSLSFGGNDPSLQIFLPTRPSDASVEAD
TRHRPGVRNGIHTEDWISLSLGAGGDSAVANELSSGQPSQTKNSSLDSVADTASLLLGMN
DGVSMKSSKERSNGPSSRERSDGPFNFPRQRRSVRPRLYLSIDSDTE

Transcript Sequence

Gene sequence data has not been registered.